I use a combination of spatial, phylogenetic and genomic analyses (mainly reduced representation library approcaches, but also whole genome sequencing) to answer my research questions (mainly using standalone software and custom R, Python, Perl and  bash scripts in Unix).

Software/packages: ArcGIS, qGIS, SDMToolbox, Raster, Spdep, Glmulti, Mumin, Maxent, Biodiverse, BEAST, RAxML, MrBayes, Stacks, pyRAD, ∂a∂i, EEMS, Structure, Admixture, Adegenet, FastStructure, TreeMix, diyABC, SNAPP, SVDQuartets